Temporal genomics
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This is a recording of a seminar I gave to the TempGenomics-RCN discussing temporal trends in genetic diversity.
The work I discussed in this is published in: Leigh et al. 2019 Evolutionary Applications doi.org/10.1111/eva.12810 Paz-Vinaz et al., 2021 Ecology Letters doi.org/10.1111/ele.13732 All underlying data is fully accessible at doi.org/10.5061/dryad.8c4c359 Always open to collaboration! |
As requested the additional papers discussed in the presentation are listed below.
The importance of genetic diversity to fitness and adaptive potential
Alendorf, 1986 doi:10.1002/zoo.1430050212
Reed and Frankham, 2003 doi: 10.1046/j.1523-1739.2003.01236.x
Swindell and Bouzat, 2005 doi: 10.1111/j.0014-3820.2005.tb00925.x
Hoffmann et al., 2017 doi: 10.1016/j.tree.2017.03.012
Early or additional monitoring of genetic diversity
DiBattista, 2007 (comparison of diversity in disturbed and undisturbed population) doi: 10.1007/s10592-007-9317-z
Miraldo et al., 2016 (global assessment of COI/cytB diversity in mammals and amphibians) doi: 10.1126/science.aaf4381
Díez-del-Molino et al., 2018 (genome-wide diversity and RedList status) doi: 10.1016/j.tree.2017.12.002
Millette et al., 2019 (though see Paz-Vinaz et al., 2021/Millette et al., 2021 Comments) doi: 10.1111/ele.13394
Větrovský et al., 2019 (Global map of projected fungal species diversity) doi: 10.1038/s41467-019-13164-8
Schmidt et al., 2020 (Lower genetic variation in mammals in urban environments) doi: 10.1098/rspb.2019.2497
De Roches et al., 2021 (recent discussion of genetic diversity) doi:10.1038/s41559-021-01403-5
Expected patterns of genetic diversity loss over time (plus some extra)
Fuerst and Maruyama (1986) Zoo Biology
Lacy, 1987 doi: https://www.jstor.org/stable/2385830
pg 233 Frankham et al., (2002) Loss of genetic diversity in small populations. In: Introduction to Conservation Genetics. Cambridge University Press. https://doi.org/10.1017/CBO9780511808999.013
Macrogenetics
Miraldo et al., 2016 doi: 10.1126/science.aaf4381
Blanchet et al., 2017. doi: 10.1016/j.tig.2017.06.007
Millette et al., 2019 doi: 10.1111/ele.13394
Manel et al., 2020 doi: 10.1038/s41467-020-14409-7
Schmidt et al., 2020 doi: 10.1098/rspb.2019.2497
Alendorf, 1986 doi:10.1002/zoo.1430050212
Reed and Frankham, 2003 doi: 10.1046/j.1523-1739.2003.01236.x
Swindell and Bouzat, 2005 doi: 10.1111/j.0014-3820.2005.tb00925.x
Hoffmann et al., 2017 doi: 10.1016/j.tree.2017.03.012
Early or additional monitoring of genetic diversity
DiBattista, 2007 (comparison of diversity in disturbed and undisturbed population) doi: 10.1007/s10592-007-9317-z
Miraldo et al., 2016 (global assessment of COI/cytB diversity in mammals and amphibians) doi: 10.1126/science.aaf4381
Díez-del-Molino et al., 2018 (genome-wide diversity and RedList status) doi: 10.1016/j.tree.2017.12.002
Millette et al., 2019 (though see Paz-Vinaz et al., 2021/Millette et al., 2021 Comments) doi: 10.1111/ele.13394
Větrovský et al., 2019 (Global map of projected fungal species diversity) doi: 10.1038/s41467-019-13164-8
Schmidt et al., 2020 (Lower genetic variation in mammals in urban environments) doi: 10.1098/rspb.2019.2497
De Roches et al., 2021 (recent discussion of genetic diversity) doi:10.1038/s41559-021-01403-5
Expected patterns of genetic diversity loss over time (plus some extra)
Fuerst and Maruyama (1986) Zoo Biology
Lacy, 1987 doi: https://www.jstor.org/stable/2385830
pg 233 Frankham et al., (2002) Loss of genetic diversity in small populations. In: Introduction to Conservation Genetics. Cambridge University Press. https://doi.org/10.1017/CBO9780511808999.013
Macrogenetics
Miraldo et al., 2016 doi: 10.1126/science.aaf4381
Blanchet et al., 2017. doi: 10.1016/j.tig.2017.06.007
Millette et al., 2019 doi: 10.1111/ele.13394
Manel et al., 2020 doi: 10.1038/s41467-020-14409-7
Schmidt et al., 2020 doi: 10.1098/rspb.2019.2497
